Welcome!

@CloudExpo Authors: Liz McMillan, Elizabeth White, Pat Romanski, Cameron Van Orman, Flint Brenton

Related Topics: Java IoT, Open Source Cloud, Machine Learning , Agile Computing, @CloudExpo, @BigDataExpo

Java IoT: Article

How to Identify a MongoDB Performance Anti Pattern in Five Minutes

Analyzing the application

The other day I was looking at a web application that was using MongoDB as its central database. We were analyzing the application for potential performance problems and inside five minutes I detected what I must consider to be a MongoDB anti pattern and had a 40% impact on response time. The funny thing: It was a Java best practice that triggered it.

Analyzing the Application
The first thing I always do is look at the topology of an application to get a feel for it.

Overall Transaction Flow of the Application

As we see it's a modestly complex web application and it's using MongoDB as its datastore. Overall MongoDB contributes about 7% to the response time of the application. I noticed that about half of all transactions are actually calling MongoDB so I took a closer look.

Flow of Transactions that access MongoDB, showing 10% response time contribution of MongoDB

Those transactions that actually do call MongoDB spend about 10% of their response time in that popular document database. As a next step I wanted to know what was being executed against MongoDB.

Overview of all MongoDB commands. This shows that the JourneyCollection find and getCount contribute the most to response time

One immediately notices the first two lines, which contribute much more to the response time per transaction than all the others. What was interesting was that thegetCount on the JourneyCollection had the highest contribution time, but the developer responsible was not aware that he was even using it anywhere.

Things get interesting - the mysterious getCount call
Taking things one level deeper, we looked at all transactions that were executing the ominous getCount on the JourneyCollection.

Transactions that call JourneyCollection.getCount spend nearly half their time in MongoDB

What jumps out is that those particular transactions spend indeed over 40% of their time in MongoDB, so there was a big potential for improvement here. Another click and we looked at all MongoDB calls that were executed within the context of the same transaction as the getCount call we found so mysterious.

All MongoDB Statements that run within the same transaction context as the JourneyCollection.getCount

What struck us as interesting was that the number of executions per transaction of thefind and getCount on the JourneyCollection seemed closely connected. At this point we decided to look at the transactions themselves - we needed to understand why that particular MongoDB call was executed.

Single Transactions that execute the ominous getCount call

It's immediately clear that several different transaction types are executing that particulargetCount. What that meant for us is that the problem was likely in the core framework of that particular application rather than being specific to any one user action. Here is the interesting snippet:

The Transaction Trace shows where the getCount is executed exactly

We see that the WebService findJourneys spends all its time in the two MongoDB calls. The first is the actual find call to the Journey Collection. The MongoDB client is good at lazy loading, so the find does not actually do much yet. It only calls the server once we access the result set. We can see the round trip to MongoDB visualized in the call node at the end.

We also see the offending getCount. We see that it is executed by a method called sizewhich turns out to be com.mongodb.DBCursor.size method. This was news to our developer. Looking at several other transactions we found that this was a common pattern. Every time we search for something in the JourneyCollection the getCountwould be executed by com.mongodb.DBCursor.size. This always happens before we would really execute the send the find command to the server(which happens in the callmethod). So we used CompuwareAPM DTM's (a.k.a dynaTrace) developer integration and took a look at the offending code. Here is what we found:

BasicDBObject fields = new BasicDBObject();
fields.put(journeyStr + "." + MongoConstants.ID, 1);
fields.put(MongoConstants.ID, 0);

Collection locations = find(patternQuery, fields);

ArrayList results = new ArrayList(locations.size());
for (DBObject dbObject : locations) {
String loc = dbObject.getString(journeyStr);
results.add(loc);
}
return results;


The code looks harmless enough; we execute a find, create an array for the result and fill it. The offender is the location.size(). MongoDBs DBCursor is similar to the ResultSet in JDBC, it does not return the whole data set at once, but only a subset. As a consequence it doesn't really know how many elements the find will end up with. The only way for MongoDB to determine the final size seems to be to execute a getCountwith the same criteria as the original find. In our case that additional unnecessary roundtrip made up 40% of the web services response time!

An Anti-Patter triggered by a Best Practice
So it turns out that calling size on the DBCursor must be considered an anti-pattern! The real funny thing is that the developer thought he was writing performant code. He was following the best practice to pre-size arrays. This avoids any unnecessary re-sizing. In this particular case however, that minor theoretical performance improvement led to a 40% performance degradation!

Conclusion
The take away here is not that MongoDB is bad or doesn't perform. In fact the customer is rather happy with it. But mistakes happen and similar to other database applications we need to have the visibility into a running application to see how much it contributes to the overall response time. We also need to have that visibility to understand which statements are called where and why.

In addition this also demonstrates nicely why premature micro optimization, without leveraging an APM solution, in production will not lead to better performance. In some cases - like this one - it can actually lead to worse performance.

More Stories By Michael Kopp

Michael Kopp has over 12 years of experience as an architect and developer in the Enterprise Java space. Before coming to CompuwareAPM dynaTrace he was the Chief Architect at GoldenSource, a major player in the EDM space. In 2009 he joined dynaTrace as a technology strategist in the center of excellence. He specializes application performance management in large scale production environments with special focus on virtualized and cloud environments. His current focus is how to effectively leverage BigData Solutions and how these technologies impact and change the application landscape.

Comments (0)

Share your thoughts on this story.

Add your comment
You must be signed in to add a comment. Sign-in | Register

In accordance with our Comment Policy, we encourage comments that are on topic, relevant and to-the-point. We will remove comments that include profanity, personal attacks, racial slurs, threats of violence, or other inappropriate material that violates our Terms and Conditions, and will block users who make repeated violations. We ask all readers to expect diversity of opinion and to treat one another with dignity and respect.


@CloudExpo Stories
SYS-CON Events announced today that Keisoku Research Consultant Co. will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Keisoku Research Consultant, Co. offers research and consulting in a wide range of civil engineering-related fields from information construction to preservation of cultural properties. For more information, vi...
SYS-CON Events announced today that Interface Corporation will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Interface Corporation is a company developing, manufacturing and marketing high quality and wide variety of industrial computers and interface modules such as PCIs and PCI express. For more information, visit http://www.i...
SYS-CON Events announced today that MIRAI Inc. will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. MIRAI Inc. are IT consultants from the public sector whose mission is to solve social issues by technology and innovation and to create a meaningful future for people.
SYS-CON Events announced today that Fusic will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Fusic Co. provides mocks as virtual IoT devices. You can customize mocks, and get any amount of data at any time in your test. For more information, visit https://fusic.co.jp/english/.
As businesses evolve, they need technology that is simple to help them succeed today and flexible enough to help them build for tomorrow. Chrome is fit for the workplace of the future — providing a secure, consistent user experience across a range of devices that can be used anywhere. In her session at 21st Cloud Expo, Vidya Nagarajan, a Senior Product Manager at Google, will take a look at various options as to how ChromeOS can be leveraged to interact with people on the devices, and formats ...
SYS-CON Events announced today that Taica will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Taica manufacturers Alpha-GEL brand silicone components and materials, which maintain outstanding performance over a wide temperature range -40C to +200C. For more information, visit http://www.taica.co.jp/english/.
Join IBM November 1 at 21st Cloud Expo at the Santa Clara Convention Center in Santa Clara, CA, and learn how IBM Watson can bring cognitive services and AI to intelligent, unmanned systems. Cognitive analysis impacts today’s systems with unparalleled ability that were previously available only to manned, back-end operations. Thanks to cloud processing, IBM Watson can bring cognitive services and AI to intelligent, unmanned systems. Imagine a robot vacuum that becomes your personal assistant th...
In his session at @ThingsExpo, Greg Gorman is the Director, IoT Developer Ecosystem, Watson IoT, will provide a short tutorial on Node-RED, a Node.js-based programming tool for wiring together hardware devices, APIs and online services in new and interesting ways. It provides a browser-based editor that makes it easy to wire together flows using a wide range of nodes in the palette that can be deployed to its runtime in a single-click. There is a large library of contributed nodes that help so...
Many companies start their journey to the cloud in the DevOps environment, where software engineers want self-service access to the custom tools and frameworks they need. Machine learning technology can help IT departments keep up with these demands. In his session at 21st Cloud Expo, Ajay Gulati, Co-Founder, CTO and Board Member at ZeroStack, will discuss the use of machine learning for automating provisioning of DevOps resources, taking the burden off IT teams.
SYS-CON Events announced today that Daiya Industry will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Daiya Industry specializes in orthotic support systems and assistive devices with pneumatic artificial muscles in order to contribute to an extended healthy life expectancy. For more information, please visit https://www.daiyak...
What is the best strategy for selecting the right offshore company for your business? In his session at 21st Cloud Expo, Alan Winters, U.S. Head of Business Development at MobiDev, will discuss the things to look for - positive and negative - in evaluating your options. He will also discuss how to maximize productivity with your offshore developers. Before you start your search, clearly understand your business needs and how that impacts software choices.
SYS-CON Events announced today that Cedexis will exhibit at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Cedexis is the leader in data-driven enterprise global traffic management. Whether optimizing traffic through datacenters, clouds, CDNs, or any combination, Cedexis solutions drive quality and cost-effectiveness.
Most of the time there is a lot of work involved to move to the cloud, and most of that isn't really related to AWS or Azure or Google Cloud. Before we talk about public cloud vendors and DevOps tools, there are usually several technical and non-technical challenges that are connected to it and that every company needs to solve to move to the cloud. In his session at 21st Cloud Expo, Stefano Bellasio, CEO and founder of Cloud Academy Inc., will discuss what the tools, disciplines, and cultural...
Is advanced scheduling in Kubernetes achievable? Yes, however, how do you properly accommodate every real-life scenario that a Kubernetes user might encounter? How do you leverage advanced scheduling techniques to shape and describe each scenario in easy-to-use rules and configurations? In his session at @DevOpsSummit at 21st Cloud Expo, Oleg Chunikhin, CTO at Kublr, will answer these questions and demonstrate techniques for implementing advanced scheduling. For example, using spot instances ...
SYS-CON Events announced today that SIGMA Corporation will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. uLaser flow inspection device from the Japanese top share to Global Standard! Then, make the best use of data to flip to next page. For more information, visit http://www.sigma-k.co.jp/en/.
SYS-CON Events announced today that Yuasa System will exhibit at the Japan External Trade Organization (JETRO) Pavilion at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Yuasa System is introducing a multi-purpose endurance testing system for flexible displays, OLED devices, flexible substrates, flat cables, and films in smartphones, wearables, automobiles, and healthcare.
SYS-CON Events announced today that B2Cloud will exhibit at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. B2Cloud specializes in IoT devices for preventive and predictive maintenance in any kind of equipment retrieving data like Energy consumption, working time, temperature, humidity, pressure, etc.
Today traditional IT approaches leverage well-architected compute/networking domains to control what applications can access what data, and how. DevOps includes rapid application development/deployment leveraging concepts like containerization, third-party sourced applications and databases. Such applications need access to production data for its test and iteration cycles. Data Security? That sounds like a roadblock to DevOps vs. protecting the crown jewels to those in IT.
SYS-CON Events announced today that NetApp has been named “Bronze Sponsor” of SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. NetApp is the data authority for hybrid cloud. NetApp provides a full range of hybrid cloud data services that simplify management of applications and data across cloud and on-premises environments to accelerate digital transformation. Together with their partners, NetApp em...
Why Federal cloud? What is in Federal Clouds and integrations? This session will identify the process and the FedRAMP initiative. But is it sufficient? What is the remedy for keeping abreast of cutting-edge technology? In his session at 21st Cloud Expo, Rasananda Behera will examine the proposed solutions: Private or public or hybrid cloud Responsible governing bodies How can we accomplish?